Part 2. Notebook for Network Analysis in Neuroscience

Authors: Eduarda Centeno & Fernando Santos

This second part of the project will focus on the 3D visualizations we have developed.

Table of contents

  1. Imports
  2. Short recap - importing data & creating graph object
  3. Creating 3D visualizations with Plotly

1. Imports

2. Short recap - importing data & creating graph object

3. Creating 3D visualizations with Plotly

First, we need to import the necessary backup script. Then, it is possible to use a list of values for most of the nodal metrics, e.g. centralities, etc.

Let's start with the visualization of pairwise interactions

Let's now have a look at high-dimensional interactions (TDA)

Acknowledgements

"Data were provided [in part] by the Human Connectome Project, MGH-USC Consortium (Principal Investigators: Bruce R. Rosen, Arthur W. Toga and Van Wedeen; U01MH093765) funded by the NIH Blueprint Initiative for Neuroscience Research grant; the National Institutes of Health grant P41EB015896; and the Instrumentation Grants S10RR023043, 1S10RR023401, 1S10RR019307."